PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048190_wgha.t2
Common NameSOVF_048190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ARF
Protein Properties Length: 812aa    MW: 90630.8 Da    PI: 6.4755
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048190_wgha.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23125226199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  Sp_048190_wgha.t2 125 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 212
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  Sp_048190_wgha.t2 213 WNEKNQLLLGIRRA 226
                        8899999****997 PP

2Auxin_resp1187.8e-39251334183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+v++nPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Sp_048190_wgha.t2 251 AAHAANTNSCFTVFFNPRASPSEFIIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 334
                        79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.19E-48112254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-42118240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.23E-21124225No hitNo description
PfamPF023621.3E-21125226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.379125227IPR003340B3 DNA binding domain
SMARTSM010196.9E-24125227IPR003340B3 DNA binding domain
PfamPF065075.7E-34251334IPR010525Auxin response factor
PfamPF023097.8E-8703801IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-7709788No hitNo description
PROSITE profilePS5174523.464715799IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MKLSTSGLGQ QGGEKKCLNS ELWHACAGPL VCLPTAGSRV VYFPQGHSEQ VAATTNRDVD  60
GQIPNYPSLP AQLICQLHNV TMHADVETDE VYAQMTLQPL SPQEQKDIYL PADFGIPSRQ  120
PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPPLDYSQQP PAQELVARDL HDVEWKFRHI  180
FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS  240
DSMHIGLLAA AAHAANTNSC FTVFFNPRAS PSEFIIPLSK YVKAVYHTRV SVGMRFRMLF  300
ETEESSVRRY MGTITGISDL DSVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF  360
PMYPSLFPLR LKRPWHAGTS SLSDNIDDAA NSLMWLRGQG GEQGLNSMNF QSLGMFPWMQ  420
TRADNLLPLG NQNQQYQALL SSNFQNLRGS DVLNPQMMQF QHPVQYLQQS TGQIPMLQQQ  480
QQQQQQLFHP SIAQQLLQGQ SQVSKDNLPL PQRILPQEYF KQNEGLANQQ LCGSEAYSLS  540
NNEMQSRQQH HTMSSSLGKA DTSTANAELP SQSPVQNMMS STRTEGISSL SDMSNVNHTM  600
LNEQTSQHPM VSLNSYTPIN AFGDAVSLPP YPGKDASLET GNCSLDVQNH NVFGANLDSS  660
GLVLPMTMPT TYRNSSHDTD LCSIPSGFHN PMYGCNSNSP ELHSEGQGDL QTPTRTFVKV  720
YKSGSVGRSL DISRFSSYHE LREELGQMFG IEGKLDDPLR SGWQLVFVDR ENDVLLLGDD  780
PWEAFVYNVS YIKILSPEDV QKLGKHGTET YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651035543388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675199.10.0PREDICTED: auxin response factor 8 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A0K9RPP20.0A0A0K9RPP2_SPIOL; Auxin response factor
STRINGGLYMA11G31940.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8